PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500461.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29051.4 Da    PI: 9.1389
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.4e-161050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+  r+ t+ kR++g+lKK  ELS+LC++e++ i++++
  XP_004500461.1 10 FIVNDAARKATYKKRKKGLLKKVDELSTLCGIEACAILYGP 50
                    7899***********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.811149IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-20160IPR002100Transcription factor, MADS-box
CDDcd002662.19E-18285No hitNo description
SuperFamilySSF554557.33E-23294IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDAARKAT YKKRKKGLLK KVDELSTLCG IEACAILYGP YDPQPEIWPS  60
PWGVERALSK FRTMPEMEQS KKMMNQETFM RQRVLKTKEQ VKKQRKENRE KETTLLMFQC  120
LNEGKIVHNN MTMVDLNDLS WLIDQNLKNI GRKLEAEDNN NNNINNNNNN GQIQIMDTPN  180
QLVELAPLPS KNEELPPMGH PHVGLGMSNG DNIMQRQWIM DLMINGNGNG NGDEINIPFG  240
DANVQSGFWP NLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVNDAARKATYKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500461.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-57AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072TZT11e-109A0A072TZT1_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA11G33460.15e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-53AGAMOUS-like 80